Somalia's Code-Red: Looming Security Crisis in the Horn
Today's editorial in The Somali Wire is written by Dr. Mursal M. Khaliif.
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Never, in the history of Somalia's contemporary governance, has so much political goodwill, both domestic and international, been squandered by anyone as President Hassan Sheikh Mohamud has done in the past 12 months. In the early morning hours of 16 May 2022, Hassan Sheikh Mohamud (HSM) was elected as the 10th President of Somalia, marking his second term, following his first from 2012 to 2017. Optimism was high, partly due to his previous experience as president and partly because of the deep unpopularity of his predecessor, Mohamed Abdullahi Farmaajo, with many relieved that the incumbent had been defeated. However, just over three years later, the outlook in Somalia remains unrelentingly bleak due to HSM's destabilising political agenda.
The president has squandered significant domestic and international support in the past three years. Even after appointing an incompetent Prime Minister with no track record of leadership to speak of, all Federal Member States' leaders cooperated closely with HSM, and the Federal Parliament approved all of his legislative priorities for the first two years. And Somalia's international partners wholeheartedly backed him, from debt forgiveness to lifting of the arms embargo to membership in the coveted East African Community. Piggybacking on the successes of the ma'awiisley in Hiiraan and Middle Shabelle, HSM's call for a national offensive against Al-Shabaab was welcomed by both the Somali people and international partners alike. As the war was being waged against the terrorists in a manner that can best be described as mediocre, there was still so much hope that HSM could turn things around, even while pursuing divisive domestic politics. This agenda has centred around scrupulous changes to the Provisional Constitution and unilateral electoral reform intended solely for his re-election in 2026.
Then came the two Darood-majority Federal Member States, Puntland and Jubaland, which successively split from the federation, opposing Villa Somalia's increasingly authoritarian constitutional and electoral agenda. Beyond that, HSM's approval of unconstitutional term extensions for his allies in Galmudug, Hirshabelle, and South West has also been considered a prelude to the president seeking his own extension when his mandate expires in mid-2026. The harm to Somalia's federal system in pursuit of Villa Somalia's centralising agenda became particularly extreme after Jubaland President Ahmed Madoobe withdrew from the National Consultative Council in October 2024, before organising state-level elections a month later. This was followed by the deployment of hundreds of Somali National Army (SNA) troops to Ras Kamboni, a coastal enclave in southern Jubaland, in a thwarted attempt to unseat Madoobe. It was an embarrassing debacle, with Jubaland forces routing hundreds of SNA across the border into Kenya.
Yet despite this failure and mounting calls by domestic opposition and influential allies of Somalia to resolve the political dispute with Jubaland through dialogue, Villa Somalia has shown zero willingness for peaceful engagement. Since Ras Kamboni in December, Villa Somalia has continued to attempt to destabilise Jubaland's government, now through Gedo. In turn, HSM has deployed the weight of the federal government to undermine Jubaland, and violent clashes have ensued in Baardheere, Beledhawo, and Dollow in the attempts to install loyal district commissioners and forces. Each of these districts is located on the borders of Kenya and Ethiopia, from which Al-Shabaab has sought to penetrate into Somalia's neighbours. Instead of being able to solely focus on the fight against the militant movement, Jubaland forces and administration have been forced to fend off HSM's attacks on Jubaland for over 8 months.
In recent weeks, Villa Somalia has further increased its deployment of forces to Gedo, and sought to ban flights into several airstrips in the region. The federal government appears set on securing control of towns in Gedo to implement its contentious one-person, one-vote (OPOV) agenda, even as the third round of negotiations between the Somalia Salvation Forum (SSF) and the president took place yesterday at Villa Somalia. Early reports indicate that little progress was made again, as the president continues to frustrate progress. The National Intelligence and Security Agency (NISA) has now appointed Abdirashid Janan as the director for the Gedo region, a figure previously accused of severe human rights violations, and a nomination clearly intended to remilitarise the political dispute in Jubaland.
This diverting of federal resources to attempt to violently reverse engineer the re-election of Madoobe comes even while jihadists roam freely in Mogadishu, and still control most of the major bridges across the Shabelle River to the capital. Reports in the past 24 hours have suggested that Somali National Army (SNA) troops and partnered Ugandan forces have withdrawn again from Sabiid, one of the principal targets of their operations. Likewise, many of the villages and towns in Lower and Middle Shabelle that have fallen to Al-Shabaab were liberated three years ago in the ma'awiisley offensive. Losing these areas to Al-Shabab is an indictment of both how HSM's administration has conducted the war on terror and the evaporation of the Somali people's confidence in the regime. Meanwhile, over the weekend, Puntland security forces seized a ship off the Bareeda coast carrying armoured vehicles and light weapons destined for the federal government. Although details are still murky, preliminary reports suggest the involvement of shady businessmen and close political allies of Villa Somalia in the purchase of the weapons, individuals previously implicated in the smuggling of arms and arming of loyal Abgaal sub-clan militias.
As this policy of destabilising Jubaland's administration continues, the chief beneficiary is none other than Al-Shabaab. And sooner rather than later, the terror group may well capitalise on this opportunity in Gedo, as it has done in central Somalia. Such a ripple of insecurity across the Kenyan and/or Ethiopian borders grows exponentially as a direct result of HSM's personal vendetta against Jubaland. The failure of regional partners and the international community to rein in the wayward central administration may well result in bloodshed beyond Somalia's borders.
The clock is ticking, and sustained inaction will likely be regretted in the future. With regional partners committing their forces-- unpaid-- to the African Union mission in Somalia, and Western allies footing the bill for much of Somalia's development and security, there remains tremendous leverage. It is time to utilise all the necessary levers to stop Villa Somalia in its centralising, destabilising tracks before it is too late.
Dr. Mursal M. Khaliif is a member of Somalia's Federal Parliament for the Gedo region, chairing the bicameral committee on friendship with the United States and a member of the parliamentary defence committee. He is the former Minister of Planning & International Cooperation, and former Minister of Health for Jubaland State of Somalia.
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Two days of heavy clashes (3–4 June) in the Somali capital, Mogadishu, between federal troops and opposition-aligned forces have underscored both the fragility of the city’s security environment and the volatility of electoral politics. Although relative calm has since returned to the two hardest-hit districts - Hawl Wadaag and Abdiaziz - and mediation efforts have intensified, tensions remain high, fuelling fears of renewed armed skirmishes. Credible reports of mass clan militia mobilisation on the edges of Mogadishu speak to a conflict that is widening. The militarisation of politics and elite fragmentation over the electoral process have shattered a core assumption: that Somali leaders will ultimately step back from the brink to negotiate a way forward. Consequently, the country is entering a perilous phase in which domestic factions alone cannot resolve the impasse, making neutral, external mediation a necessity.
Puntland President Sa'id Abdullah Deni is unofficially in the race for the federal presidency of Somalia. By most accounts, the regional leader is running again and this explains his re-engagement with Mogadishu after a three-year hiatus. Driven by shifting electoral dynamics, Deni’s decision to re-engage with the centre forces him to confront a radically altered political landscape in Mogadishu. Under President Hassan Sheikh Mohamud (HSM), the federal government has rewritten the rules of Somali politics, altering the institutional framework and consolidating executive authority.
A flurry of media reports in recent months suggest the US and Eritrea could be inching towards a potential deal to reset decades of frosty relations and a partial lifting of American sanctions imposed in 2021. The news of discreet talks between the two sides, mediated by Egypt, was initially reported by the influential Washington Post newspaper in April 2026 and have since been partially confirmed by official sources.
On 10 May, the Federal Government of Somalia (FGS) unilaterally conducted its contentious 'one-person-one-vote' (OPOV) electoral model in South West State (SWS), directly overriding opposition demands for a negotiated, consensus-based framework. Crucially, the very laws underpinning these OPOV elections are themselves deeply contested: the electoral framework was created following a rushed revision of Somalia’s constitution that many federal member states and opposition groups rejected. The vote, exclusively managed by the National Independent Electoral and Boundaries Commission (NIEBC), saw localised polling in 13 districts and across 126 poll centres and 276 stations. While 376,212 citizens were registered, actual turnout reached 132,430 voters - a participation rate of approximately 35.2% - with 128,276 valid ballots cast and 4,154 deemed spoilt/invalid. The electoral outcome, unsurprisingly, solidified a decisive mandate for Hassan Sheikh Mohamud’s Justice and Solidarity Party (JSP); the governing party secured an absolute majority of 51 out of 95 contested legislative seats, comfortably outpacing its closest rival, Sharif Hassan Sheikh Aden’s Ururka Horumarka, which claimed 14 seats.
The Federal Government of Somalia (FGS) has effectively entered a 'grey transition' - a deeply fraught and hotly-contested interregnum that could upend decades of state-building and foment greater instability. By utilising the March 2026 constitutional amendments to extend his presidential mandate until May 2027, Hassan Sheikh Mohamud (HSM) has effectively plunged the fragile Horn of Africa state into a profound period of severe internal strain and legitimacy crisis. This legalistic manoeuvre has roiled domestic politics and put Western partners of Somalia in a difficult spot. If Somalia's Western allies concede to HSM's fait accompli without extracting concessions from him on a negotiated settlement, they are likely to embolden Hassan Sheikh.
Somalia is entering one of the most dangerous political periods in its recent history. An unprecedented convergence of unresolved constitutional disputes, contested electoral arrangements, rising tensions between federal and regional actors, and the growing politicisation of state security institutions has pushed the country towards a potentially destabilising impasse.
'Give Peace a Chance' was the title of a 1969 single written by John Lennon, recorded during his famous honeymoon 'bed-in' with Yoko Ono. Capturing the counterculture sentiments of the time, it was adopted as an anthem of the anti-Vietnam War movement in the following decade. Thirty years later, a provocative inversion of the title-- 'Give War a Chance'-- was adopted in a well-known Foreign Affairs article by Edward Luttwak in 1999, in which he argued that humanitarian interventions or premature negotiations can freeze conflict, resulting in endless, recurring war. Luttwak contended that war has an internal logic, and if allowed to 'run its course', can bring about a more durable peace.
A foreign-backed president, a besieged capital city, and a jihadist movement affiliated with Al-Qaeda-- this time not Somalia, but Mali. Late last week, Jama'at Nusrat al-Islam wal-Muslimin (JNIM), the transnational Salafist-jihadist group in Mali, stormed across much of the country's north, as well as entering Bakamo and assassinating the defence minister. The coordinated offensive-- in conjunction with the Tuareg separatist movement, the Azawad Liberation Front (ALF)-- has left the military junta reeling, and forced the withdrawal of their Russian allies from a number of strategic towns.
Last week, a bombshell Wall Street Journal article revealed that Washington was exploring a reset in relations with Eritrea, with US envoy for Africa Massad Boulos having met privately with senior regime officials in Egypt. Any normalisation of ties now appears to be on ice, with the reaction to Boulos's meetings — facilitated by Egypt — having been met with short shrift. But the episode speaks to broader issues about American foreign policy in the Horn and the accelerating reconfiguration of the Red Sea political order, which will not go away simply because this particular overture may have stalled.